Transcription factor–DNA binding: beyond binding site motifs S Inukai, KH Kock, ML Bulyk Current opinion in genetics & development 43, 110-119, 2017 | 406 | 2017 |
Survey of variation in human transcription factors reveals prevalent DNA binding changes LA Barrera, A Vedenko, JV Kurland, JM Rogers, SS Gisselbrecht, ... Science 351 (6280), 1450-1454, 2016 | 206 | 2016 |
Age-associated changes in expression of small, noncoding RNAs, including microRNAs, in C. elegans M Kato, X Chen, S Inukai, H Zhao, FJ Slack Rna 17 (10), 1804-1820, 2011 | 195 | 2011 |
miR-34a silences c-SRC to attenuate tumor growth in triple-negative breast cancer BD Adams, VB Wali, CJ Cheng, S Inukai, CJ Booth, S Agarwal, DL Rimm, ... Cancer research 76 (4), 927-939, 2016 | 192 | 2016 |
Novel microRNAs differentially expressed during aging in the mouse brain S Inukai, A de Lencastre, M Turner, F Slack PloS one 7 (7), e40028, 2012 | 172 | 2012 |
MicroRNAs and the genetic network in aging S Inukai, F Slack Journal of molecular biology 425 (19), 3601-3608, 2013 | 111 | 2013 |
MicroRNAs mediate dietary-restriction-induced longevity through PHA-4/FOXA and SKN-1/Nrf transcription factors T Smith-Vikos, A de Lencastre, S Inukai, M Shlomchik, B Holtrup, FJ Slack Current biology 24 (19), 2238-2246, 2014 | 96 | 2014 |
A comprehensive Drosophila melanogaster transcription factor interactome L Shokri, S Inukai, A Hafner, K Weinand, K Hens, A Vedenko, ... Cell reports 27 (3), 955-970. e7, 2019 | 80 | 2019 |
A microRNA feedback loop regulates global microRNA abundance during aging S Inukai, Z Pincus, A De Lencastre, FJ Slack Rna 24 (2), 159-172, 2018 | 49 | 2018 |
A New System for Comparative Functional Genomics of Saccharomyces Yeasts AA Caudy, Y Guan, Y Jia, C Hansen, C DeSevo, AP Hayes, J Agee, ... Genetics 195 (1), 275-287, 2013 | 37 | 2013 |
Single-cell multi-omics analysis identifies two distinct phenotypes of newly-onset microscopic polyangiitis M Nishide, K Nishimura, H Matsushita, R Edahiro, S Inukai, H Shimagami, ... Nature Communications 14 (1), 5789, 2023 | 13 | 2023 |
MiR-33 connects cholesterol to the cell cycle S Inukai, FJ Slack Cell Cycle 11 (6), 1060-1061, 2012 | 8 | 2012 |
Widespread variation in molecular interactions and regulatory properties among transcription factor isoforms L Lambourne, K Mattioli, C Santoso, G Sheynkman, S Inukai, B Kaundal, ... bioRxiv, 2024 | 7 | 2024 |
DNA binding analysis of rare variants in homeodomains reveals homeodomain specificity-determining residues KH Kock, PK Kimes, SS Gisselbrecht, S Inukai, SK Phanor, JT Anderson, ... Nature Communications 15 (1), 3110, 2024 | 2 | 2024 |
Cross-platform DNA motif discovery and benchmarking to explore binding specificities of poorly studied human transcription factors IE Vorontsov, I Kozin, S Abramov, A Boytsov, A Jolma, M Albu, ... bioRxiv, 2024.11. 11.619379, 2024 | 1 | 2024 |
Identification of methylation-sensitive human transcription factors using meSMiLE-seq AJ Gralak, K Faltejskova, AWH Yang, C Steiner, J Russeil, N Grenningloh, ... bioRxiv, 2024.11. 11.619598, 2024 | 1 | 2024 |
Perspectives on Codebook: sequence specificity of uncharacterized human transcription factors A Jolma, KU Laverty, A Fathi, AWH Yang, I Yellan, IE Vorontsov, S Inukai, ... bioRxiv, 2024.11. 11.622097, 2024 | 1 | 2024 |
DNA binding analysis of rare variants in homeodomains reveals novel homeodomain specificity-determining residues KH Kock, PK Kimes, SS Gisselbrecht, S Inukai, SK Phanor, JT Anderson, ... bioRxiv, 2023.06. 16.545320, 2023 | 1 | 2023 |
Abstract LB-300: Reintroduction of tumor-suppressor miR-34a shows therapeutic efficacy in triple-negative breast cancer BD Adams, V Wali, C Cheng, S Inukai, D Rimm, L Pusztai, M Saltzman, ... Cancer Research 75 (15_Supplement), LB-300-LB-300, 2015 | 1 | 2015 |
MicroRNAs and the Gene Regulatory Network During Aging S Inukai Yale University, 2015 | | 2015 |