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Mengjie Chen
Mengjie Chen
Verified email at uchicago.edu - Homepage
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Cited by
Year
Experimental investigation of geologically produced antineutrinos with KamLAND
T Araki, S Enomoto, K Furuno, Y Gando, K Ichimura, H Ikeda, K Inoue, ...
Nature 436 (7050), 499-503, 2005
5872005
Genomic analysis of oesophageal squamous-cell carcinoma identifies alcohol drinking-related mutation signature and genomic alterations
J Chang, W Tan, Z Ling, R Xi, M Shao, M Chen, Y Luo, Y Zhao, Y Liu, ...
Nature communications 8 (1), 15290, 2017
2172017
m6A mRNA methylation regulates human β-cell biology in physiological states and in type 2 diabetes
DF De Jesus, Z Zhang, S Kahraman, NK Brown, M Chen, J Hu, MK Gupta, ...
Nature Metabolism 1 (8), 765-774, 2019
2142019
Tdrkh is essential for spermatogenesis and participates in primary piRNA biogenesis in the germline
JP Saxe, M Chen, H Zhao, H Lin
The EMBO journal 32 (13), 1869-1885, 2013
2022013
m6A RNA modifications are measured at single-base resolution across the mammalian transcriptome
L Hu, S Liu, Y Peng, R Ge, R Su, C Senevirathne, BT Harada, Q Dai, ...
Nature biotechnology 40 (8), 1210-1219, 2022
1992022
Robust covariance and scatter matrix estimation under Huber’s contamination model
M Chen, C Gao, Z Ren
The Annals of Statistics 46 (5), 1932-1960, 2018
1992018
Integrated RNA and DNA sequencing reveals early drivers of metastatic breast cancer
MB Siegel, X He, KA Hoadley, A Hoyle, JB Pearce, AL Garrett, S Kumar, ...
The Journal of clinical investigation 128 (4), 1371-1383, 2018
1712018
Exon architecture controls mRNA m6A suppression and gene expression
PC He, J Wei, X Dou, BT Harada, Z Zhang, R Ge, C Liu, LS Zhang, X Yu, ...
Science 379 (6633), 677-682, 2023
1402023
VIPER: variability-preserving imputation for accurate gene expression recovery in single-cell RNA sequencing studies
M Chen, X Zhou
Genome biology 19 (1), 196, 2018
1302018
An international effort towards developing standards for best practices in analysis, interpretation and reporting of clinical genome sequencing results in the CLARITY Challenge
CA Brownstein, AH Beggs, N Homer, B Merriman, TW Yu, KC Flannery, ...
Genome biology 15, 1-18, 2014
1272014
Intratumoral heterogeneity as a source of discordance in breast cancer biomarker classification
EH Allott, J Geradts, X Sun, SM Cohen, GR Zirpoli, T Khoury, W Bshara, ...
Breast Cancer Research 18, 1-11, 2016
1192016
Transcriptome-wide profiling and quantification of N6-methyladenosine by enzyme-assisted adenosine deamination
YL Xiao, S Liu, R Ge, Y Wu, C He, M Chen, W Tang
Nature biotechnology 41 (7), 993-1003, 2023
1162023
Demystifying “drop-outs” in single-cell UMI data
TH Kim, X Zhou, M Chen
Genome biology 21 (1), 196, 2020
1122020
A general decision theory for Huber’s -contamination model
M Chen, C Gao, Z Ren
1072016
Novel HBsAg markers tightly correlate with occult HBV infection and strongly affect HBsAg detection
V Svicher, V Cento, M Bernassola, M Neumann-Fraune, F Van Hemert, ...
Antiviral research 93 (1), 86-93, 2012
982012
Allele-specific open chromatin in human iPSC neurons elucidates functional disease variants
S Zhang, H Zhang, Y Zhou, M Qiao, S Zhao, A Kozlova, J Shi, AR Sanders, ...
Science 369 (6503), 561-565, 2020
942020
Comprehensive analysis of The Cancer Genome Atlas reveals a unique gene and non-coding RNA signature of fibrolamellar carcinoma
TA Dinh, ECM Vitucci, E Wauthier, RP Graham, WA Pitman, T Oikawa, ...
Scientific reports 7 (1), 44653, 2017
932017
Extensive pleiotropism and allelic heterogeneity mediate metabolic effects of IRX3 and IRX5
DR Sobreira, AC Joslin, Q Zhang, I Williamson, GT Hansen, KM Farris, ...
Science 372 (6546), 1085-1091, 2021
912021
REPIC: a database for exploring the N6-methyladenosine methylome
S Liu, A Zhu, C He, M Chen
Genome biology 21, 1-13, 2020
852020
Integrative differential expression and gene set enrichment analysis using summary statistics for scRNA-seq studies
Y Ma, S Sun, X Shang, ET Keller, M Chen, X Zhou
Nature communications 11 (1), 1585, 2020
832020
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Articles 1–20