| Analysis of the vertebrate insulator protein CTCF-binding sites in the human genome TH Kim, ZK Abdullaev, AD Smith, KA Ching, DI Loukinov, RD Green, ... Cell 128 (6), 1231-1245, 2007 | 1275 | 2007 |
| An integrative genomics approach identifies Hypoxia Inducible Factor-1 (HIF-1)-target genes that form the core response to hypoxia Y Benita, H Kikuchi, AD Smith, MQ Zhang, DC Chung, RJ Xavier Nucleic acids research 37 (14), 4587-4602, 2009 | 581 | 2009 |
| Using quality scores and longer reads improves accuracy of Solexa read mapping AD Smith, Z Xuan, MQ Zhang BMC bioinformatics 9, 1-8, 2008 | 463 | 2008 |
| A model of breast cancer heterogeneity reveals vascular mimicry as a driver of metastasis E Wagenblast, M Soto, S Gutiérrez-Ángel, CA Hartl, AL Gable, AR Maceli, ... Nature 520 (7547), 358-362, 2015 | 447 | 2015 |
| Sperm methylation profiles reveal features of epigenetic inheritance and evolution in primates A Molaro, E Hodges, F Fang, Q Song, WR McCombie, GJ Hannon, ... Cell 146 (6), 1029-1041, 2011 | 426 | 2011 |
| A reference methylome database and analysis pipeline to facilitate integrative and comparative epigenomics Q Song, B Decato, EE Hong, M Zhou, F Fang, J Qu, T Garvin, M Kessler, ... PloS one 8 (12), e81148, 2013 | 402 | 2013 |
| Improvements to the ARTIC multiplex PCR method for SARS-CoV-2 genome sequencing using nanopore JR Tyson, P James, D Stoddart, N Sparks, A Wickenhagen, G Hall, ... BioRxiv, 2020 | 362 | 2020 |
| Directional DNA methylation changes and complex intermediate states accompany lineage specificity in the adult hematopoietic compartment E Hodges, A Molaro, CO Dos Santos, P Thekkat, Q Song, PJ Uren, J Park, ... Molecular cell 44 (1), 17-28, 2011 | 357 | 2011 |
| Predicting the molecular complexity of sequencing libraries T Daley, AD Smith Nature methods 10 (4), 325-327, 2013 | 351 | 2013 |
| Site identification in high-throughput RNA–protein interaction data PJ Uren, E Bahrami-Samani, SC Burns, M Qiao, FV Karginov, E Hodges, ... Bioinformatics 28 (23), 3013-3020, 2012 | 321 | 2012 |
| Before it gets started: regulating translation at the 5′ UTR PR Araujo, K Yoon, D Ko, AD Smith, M Qiao, U Suresh, SC Burns, ... International Journal of Genomics 2012 (1), 475731, 2012 | 318 | 2012 |
| The maize methylome influences mRNA splice sites and reveals widespread paramutation-like switches guided by small RNA M Regulski, Z Lu, J Kendall, MTA Donoghue, J Reinders, V Llaca, ... Genome research 23 (10), 1651-1662, 2013 | 303 | 2013 |
| Falco: high-speed FastQC emulation for quality control of sequencing data G de Sena Brandine, AD Smith F1000Research 8, 1874, 2021 | 298 | 2021 |
| High definition profiling of mammalian DNA methylation by array capture and single molecule bisulfite sequencing E Hodges, AD Smith, J Kendall, Z Xuan, K Ravi, M Rooks, MQ Zhang, ... Genome research 19 (9), 1593-1605, 2009 | 284 | 2009 |
| An evolutionarily conserved gene family encodes proton-selective ion channels YH Tu, AJ Cooper, B Teng, RB Chang, DJ Artiga, HN Turner, EM Mulhall, ... Science 359 (6379), 1047-1050, 2018 | 271 | 2018 |
| Molecular characterization of the transition from acute to chronic kidney injury following ischemia/reperfusion J Liu, S Kumar, E Dolzhenko, GF Alvarado, J Guo, C Lu, Y Chen, M Li, ... JCI insight 2 (18), 2017 | 268 | 2017 |
| Updates to the RMAP short-read mapping software AD Smith, WY Chung, E Hodges, J Kendall, G Hannon, J Hicks, Z Xuan, ... Bioinformatics 25 (21), 2841-2842, 2009 | 218 | 2009 |
| Diverse endonucleolytic cleavage sites in the mammalian transcriptome depend upon microRNAs, Drosha, and additional nucleases FV Karginov, S Cheloufi, MMW Chong, A Stark, AD Smith, GJ Hannon Molecular cell 38 (6), 781-788, 2010 | 217 | 2010 |
| Aberrant sperm DNA methylation predicts male fertility status and embryo quality KI Aston, PJ Uren, TG Jenkins, A Horsager, BR Cairns, AD Smith, ... Fertility and sterility 104 (6), 1388-1397. e5, 2015 | 215 | 2015 |
| Conserved and divergent features of mesenchymal progenitor cell types within the cortical nephrogenic niche of the human and mouse kidney NO Lindström, J Guo, AD Kim, T Tran, Q Guo, GDS Brandine, A Ransick, ... Journal of the American Society of Nephrology 29 (3), 806-824, 2018 | 203 | 2018 |
Gregory HannonCRUK, Cambridge University, New York Genome Center, Cold Spring Harbor LaboratoryVerified email at cruk.cam.ac.uk
